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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5567751_5568273_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5567751 - 5568273
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTTGTATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTCTGTAAAT
Flanking Amino Acid:
RHVAAIGPRFKLLTLGLSLL
Intron Amino Acid Position:
1372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
62.5
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
73.9
0.54
1
74.7
40
Minor 5ss
35
-1.7
2.9
40
40.1
Minor BPS
53.4
0.19
2.1
73.99
42.9

Associated Gene:

Gene:
PI4KA
Ensembl Gene ID:
ENSAPLG00000003021
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031384
5550943 - 5610283
59341
ENSAPLT00000003258
5550857 - 5610283
59427