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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5570520_5570868_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5570520 - 5570868
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTATAT
Flanking Amino Acid:
LNLRNRYAGEVSGMIQFSNA
Intron Amino Acid Position:
1174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
53.4
0.18
2
74.75
41.1

Associated Gene:

Gene:
PI4KA
Ensembl Gene ID:
ENSAPLG00000003021
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031384
5550943 - 5610283
59341
ENSAPLT00000003258
5550857 - 5610283
59427