Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5576826_5577418_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5576826 - 5577418

Intron Length:

593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGAATT

5'SS Class:

major

3'SS Sequence:

TATTCATCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

CTTCAGATAACT

Flanking Amino Acid:

SAMKNDTVTSAELNELRSTI

Intron Amino Acid Position:

880

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.1

77.9

36.4

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

75.9

0.58

0.8

67.5

38.9

Minor 5ss

42.3

-0.8

3.2

68.6

41.7

Minor BPS

45.7

-0.2

2.4

71.53

44.7

Associated Gene:

Gene:

PI4KA

Ensembl Gene ID:

ENSAPLG00000003021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031384

5550943 - 5610283

59341

ENSAPLT00000003258

5550857 - 5610283

59427