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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5582521_5585851_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5582521 - 5585851
Intron Length:
3331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
MMILNCLYFKGTWENKFPVE
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
68.7
0.42
1
62.7
41.7
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
SERPIND1
Ensembl Gene ID:
ENSAPLG00000004625
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004767
5581665 - 5587751
6087