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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5586126_5587019_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5586126 - 5587019
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGCT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
VEKWQKSMTNRTREVVLPKF
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
71.5
38.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.9
0.76
0.8
85.7
27.3
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
SERPIND1
Ensembl Gene ID:
ENSAPLG00000004625
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004767
5581665 - 5587751
6087