Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5599280_5600055_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5599280 - 5600055

Intron Length:

776

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGGTATTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAC

U12 Branch Point Sequence:

TTTTTGGTATTA

Flanking Amino Acid:

LMVWAVKDEQGAENLCIKLS

Intron Amino Acid Position:

475

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

0.9

79.2

28.8

Major BPS

72.6

0.56

0.9

63.1

35.8

Major PPT

68.5

0.42

1.2

72.3

Minor 5ss

-2.4

39.4

46.1

Minor BPS

43.4

-0.5

2.6

65.92

41.6

Associated Gene:

Gene:

PI4KA

Ensembl Gene ID:

ENSAPLG00000003021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003258

5550857 - 5610283

59427

ENSAPLT00000031384

5550943 - 5610283

59341