Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5601553_5602122_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5601553 - 5602122

Intron Length:

570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCCTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAA

U12 Branch Point Sequence:

TGAATATAAAAT

Flanking Amino Acid:

LEMLRQLLNMVKQIVGDSLL

Intron Amino Acid Position:

357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

75.8

33.3

Major BPS

69.8

0.49

70.3

31.8

Major PPT

78.2

0.64

0.7

73.5

24.7

Minor 5ss

40.6

-1.1

3.2

54.1

45.6

Minor BPS

44.1

-0.3

1.9

60.85

Associated Gene:

Gene:

PI4KA

Ensembl Gene ID:

ENSAPLG00000003021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031384

5550943 - 5610283

59341

ENSAPLT00000003258

5550857 - 5610283

59427