Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5606846_5608369_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5606846 - 5608369

Intron Length:

1524

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTTTC

5'SS Class:

major

3'SS Sequence:

TTTCCATCTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCCATTTTAAAT

Flanking Amino Acid:

GIFLIESDLQHKDNVVPYLL

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

76.8

32.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

80.4

0.68

0.7

78.6

Minor 5ss

53.3

0.11

2.3

70.3

40.3

Minor BPS

57.7

0.32

1.5

68.85

42.4

Associated Gene:

Gene:

PI4KA

Ensembl Gene ID:

ENSAPLG00000003021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031384

5550943 - 5610283

59341

ENSAPLT00000003258

5550857 - 5610283

59427