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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5610794_5611867_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5610794 - 5611867
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CAATATCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAATAT
U12 Branch Point Sequence:
TGTCTGTCAATA
Flanking Amino Acid:
SERIGVAASEELVRQGESLK
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
54.9
0.12
1.2
51.6
42.3
Major PPT
62
0.27
1
60
40.7
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
46.4
-0.2
2.2
61.41
38.9

Associated Gene:

Gene:
SNAP29
Ensembl Gene ID:
ENSAPLG00000002820
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002849
5610359 - 5616439
6081