About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5646955_5647202_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5646955 - 5647202
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CTACCTCTAAAA
Flanking Amino Acid:
WLLLIGISAQQNRVVGAMQL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
48.6
-0.1
1.8
59.85
39.5

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000038941
5634134 - 5669638
35505
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000035477
5634134 - 5669638
35505
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000031604
5634134 - 5669742
35609
ENSAPLT00000044423
5634134 - 5669742
35609