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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5647365_5648153_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5647365 - 5648153

Intron Length:

789

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTACTTCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAC

U12 Branch Point Sequence:

TACTCCTTTACT

Flanking Amino Acid:

FAVRSPAGGKLHIIEVGQPA

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

81.9

32.1

Major BPS

71.3

0.53

1.2

63.1

44.5

Major PPT

76.9

0.61

0.8

69.5

36.4

Minor 5ss

-0.9

3.5

64.1

47.4

Minor BPS

74.1

0.84

1.6

85.28

40.9

Associated Gene:

Gene:

CLTCL1

Ensembl Gene ID:

ENSAPLG00000000990

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035477

5634134 - 5669638

35505

ENSAPLT00000034506

5634134 - 5669742

35609

ENSAPLT00000031604

5634134 - 5669742

35609

ENSAPLT00000044423

5634134 - 5669742

35609

ENSAPLT00000001277

5634134 - 5668999

34866

ENSAPLT00000038941

5634134 - 5669638

35505