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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5648268_5649653_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5648268 - 5649653

Intron Length:

1386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTGAC

5'SS Class:

strong_major

3'SS Sequence:

CATCTTTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

TTACTCTTAACT

Flanking Amino Acid:

AQTDFPVAMQIGIKHGVIYL

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

77.7

30.4

Major BPS

77.9

0.69

0.8

75.9

Major PPT

75.6

0.58

72.5

37.3

Minor 5ss

-1.9

3.2

43.5

44.2

Minor BPS

80.8

1.05

1.1

90.33

32.8

Associated Gene:

Gene:

CLTCL1

Ensembl Gene ID:

ENSAPLG00000000990

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035477

5634134 - 5669638

35505

ENSAPLT00000034506

5634134 - 5669742

35609

ENSAPLT00000045287

5634134 - 5669742

35609

ENSAPLT00000031604

5634134 - 5669742

35609

ENSAPLT00000044423

5634134 - 5669742

35609

ENSAPLT00000001277

5634134 - 5668999

34866

ENSAPLT00000038941

5634134 - 5669638

35505