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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5650405_5650800_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5650405 - 5650800
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTTCTGTATAT
Flanking Amino Acid:
AAKVAASAPKGILRTSDTIR
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76.9
0.61
0.9
69.9
36.5
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
47.8
-0
2.3
72.46
44.8

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019544
5634134 - 5669742
35609
ENSAPLT00000035477
5634134 - 5669638
35505
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000045287
5634134 - 5669742
35609
ENSAPLT00000031604
5634134 - 5669742
35609
ENSAPLT00000044423
5634134 - 5669742
35609
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000038941
5634134 - 5669638
35505