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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5651002_5651124_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5651002 - 5651124
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
TTGTGCTTGACA
Flanking Amino Acid:
LLEKWLKEDKLECSEELGDL
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
79.1
0.66
0.9
77
36.3
Minor 5ss
46.1
-0.4
3.2
63.6
48.1
Minor BPS
68.1
0.56
1.8
78.22
38.8

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019544
5634134 - 5669742
35609
ENSAPLT00000035477
5634134 - 5669638
35505
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000045287
5634134 - 5669742
35609
ENSAPLT00000031604
5634134 - 5669742
35609
ENSAPLT00000044423
5634134 - 5669742
35609
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000038941
5634134 - 5669638
35505