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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5655504_5656116_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5655504 - 5656116
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATGAAA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTCTTCAAAG
Flanking Amino Acid:
ELVAEVEKRNRLKLLLPWLE
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
68.1
38.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76
0.58
1
77.9
28.3
Minor 5ss
32.1
-2
3.1
40.4
45.5
Minor BPS
58.7
0.13
1.7
64.71
43.2

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031604
5634134 - 5669742
35609
ENSAPLT00000044423
5634134 - 5669742
35609
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000038941
5634134 - 5669638
35505
ENSAPLT00000019544
5634134 - 5669742
35609
ENSAPLT00000035477
5634134 - 5669638
35505
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000045287
5634134 - 5669742
35609