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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5658916_5659308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5658916 - 5659308

Intron Length:

393

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTAACCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

CTTTTGTTAACC

Flanking Amino Acid:

VLDNSVFSEHRNLQNLLILT

Intron Amino Acid Position:

1022

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

77.9

0.69

78.3

31.3

Major PPT

61.5

0.26

1.1

61.5

38.2

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

64.9

0.45

2.1

77.35

39.1

Associated Gene:

Gene:

CLTCL1

Ensembl Gene ID:

ENSAPLG00000000990

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019544

5634134 - 5669742

35609

ENSAPLT00000035477

5634134 - 5669638

35505

ENSAPLT00000001277

5634134 - 5668999

34866

ENSAPLT00000034506

5634134 - 5669742

35609

ENSAPLT00000045287

5634134 - 5669742

35609

ENSAPLT00000031604

5634134 - 5669742

35609

ENSAPLT00000044423

5634134 - 5669742

35609

ENSAPLT00000028521

5634134 - 5669742

35609

ENSAPLT00000038941

5634134 - 5669638

35505