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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5659493_5660065_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5659493 - 5660065
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATCT
Flanking Amino Acid:
KFDVNTSAIQVLIEHIGNLD
Intron Amino Acid Position:
1084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64
0.31
1
59.2
40.5
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
69.5
0.69
1.5
84.41
36.4

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031604
5634134 - 5669742
35609
ENSAPLT00000044423
5634134 - 5669742
35609
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000038941
5634134 - 5669638
35505
ENSAPLT00000019544
5634134 - 5669742
35609
ENSAPLT00000035477
5634134 - 5669638
35505
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000045287
5634134 - 5669742
35609