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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5662211_5662291_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5662211 - 5662291
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTAATGAATC
Flanking Amino Acid:
LFWSRVNIPKVLRAAEQAHL
Intron Amino Acid Position:
1348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.6
0.71
0.9
81.4
34.9
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
49.9
-0
1.9
66.85
38

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019544
5634134 - 5669742
35609
ENSAPLT00000038941
5634134 - 5669638
35505
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000035477
5634134 - 5669638
35505
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000045287
5634134 - 5669742
35609
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000044423
5634134 - 5669742
35609