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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5662442_5663225_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5662442 - 5663225

Intron Length:

784

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TGTAACCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

TAATATGTAACC

Flanking Amino Acid:

EGQFKDIIAKVANVELYYKA

Intron Amino Acid Position:

1398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.4

1.12

0.8

76.1

39.3

Major BPS

77.9

0.69

0.8

75.9

Major PPT

67.2

0.39

59.5

41.6

Minor 5ss

29.2

-2.4

3.8

40.8

45.4

Minor BPS

49.5

-0

2.1

65.39

39.9

Associated Gene:

Gene:

CLTCL1

Ensembl Gene ID:

ENSAPLG00000000990

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034506

5634134 - 5669742

35609

ENSAPLT00000045287

5634134 - 5669742

35609

ENSAPLT00000028521

5634134 - 5669742

35609

ENSAPLT00000044423

5634134 - 5669742

35609

ENSAPLT00000019544

5634134 - 5669742

35609

ENSAPLT00000038941

5634134 - 5669638

35505

ENSAPLT00000001277

5634134 - 5668999

34866

ENSAPLT00000035477

5634134 - 5669638

35505