About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5663849_5664437_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5663849 - 5664437
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTCAAAC
Flanking Amino Acid:
NLLTEEEDYQGLRASIDAYD
Intron Amino Acid Position:
1479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74
0.54
1
70.9
38.7
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
54.2
0.11
1.6
68.29
36.9

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019544
5634134 - 5669742
35609
ENSAPLT00000035477
5634134 - 5669638
35505
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000045287
5634134 - 5669742
35609
ENSAPLT00000031604
5634134 - 5669742
35609
ENSAPLT00000044423
5634134 - 5669742
35609
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000038941
5634134 - 5669638
35505