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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5665633_5666344_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5665633 - 5666344
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAA
U12 Branch Point Sequence:
CCCCTCTGAATT
Flanking Amino Acid:
IQVMREYLTKVDGLFYKVDK
Intron Amino Acid Position:
1610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
63.3
0.33
1.2
55.4
41.7
Major PPT
83.9
0.76
0.8
78
35.4
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
50.7
0.1
1.5
61.15
43.3

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034506
5634134 - 5669742
35609
ENSAPLT00000028521
5634134 - 5669742
35609
ENSAPLT00000019544
5634134 - 5669742
35609
ENSAPLT00000001277
5634134 - 5668999
34866
ENSAPLT00000035477
5634134 - 5669638
35505