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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5666366_5669626_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5666366 - 5669626
Intron Length:
3261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACACTC
5'SS Class:
major
3'SS Sequence:
CATGCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATGC
Flanking Amino Acid:
LTKVDGLFYKASS*
Intron Amino Acid Position:
1617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
65.9
40.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.4
0.64
0.9
69
41.5
Minor 5ss
36.6
-1.5
3.2
50.8
45.8
Minor BPS
55.7
0.16
2.1
74.6
42.2

Associated Gene:

Gene:
CLTCL1
Ensembl Gene ID:
ENSAPLG00000000990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035477
5634134 - 5669638
35505