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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5706856_5707270_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5706856 - 5707270
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GTGTTTTGCACT
Flanking Amino Acid:
RIHLKEERVEVWFKNRRAKW
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
71.2
0.53
1
61
37.5
Major PPT
80.2
0.68
0.9
70.6
40.2
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
48.6
-0
1.9
68.66
42.6

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032200
5705498 - 5707856
2359