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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5709235_5709824_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5709235 - 5709824
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CCTTTCTCAGGC
Flanking Amino Acid:
SKAGIKAAEEGEAEKDDKDA
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
71.9
0.49
0.9
72.6
32.2
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
44.6
-0.4
2
53.43
44.7

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331