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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5712035_5712650_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5712035 - 5712650
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAA
U12 Branch Point Sequence:
CCTTCCATAAAA
Flanking Amino Acid:
ARNTLMYYPTGVPDEEDTFK
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
53
0.08
1
60.9
31.3
Major PPT
84.6
0.78
0.8
76.4
37.6
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
60
0.31
1.8
69.53
42.5

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331