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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5715523_5716064_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5715523 - 5716064
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTGTAAAA
Flanking Amino Acid:
ALRKVTENLASLTPKGLSPA
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.3
0.88
0.7
81.9
34.4
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
54.1
0.13
2.1
73.22
38.6

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331