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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5716133_5746156_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5716133 - 5746156
Intron Length:
30024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AATAACACAACT
Flanking Amino Acid:
ALQRLVNRTAKLRCTPGQFA
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.8
31.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
82.6
0.73
0.7
76.7
32
Minor 5ss
37.1
-1.5
2.8
43.5
37.7
Minor BPS
46.5
-0.1
2
67.7
41.8

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331