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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5746280_5756024_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5746280 - 5756024
Intron Length:
9745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TCCTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCATTTTTCACT
Flanking Amino Acid:
EDESDEVDCPGLTGDQRTYH
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.3
0.82
0.7
84.4
23.5
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
54.1
0.21
1.7
68.47
42.8

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331