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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5756151_5758316_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5756151 - 5758316
Intron Length:
2166

Sequence Information:

Terminal Dinucleotides:
GT-AT
5'SS Sequence:
GCA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTCTATTCTTCAT|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTCCCTTCTATT
Flanking Amino Acid:
VNVAQPVRFSSFLGKCPTGW
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
46.6
-0.1
3.2
77.2
36.8
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
48.7
-0
1.8
69.37
41.8

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331