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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5758537_5759516_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5758537 - 5759516
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GTTTTTAGAATC
Flanking Amino Acid:
EKTFVRKDQRRFWVGYQYVI
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
70
0.5
1
67
39.8
Major PPT
86.2
0.81
0.8
80.9
36.4
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
49.7
-0
1.7
64.42
35

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331