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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5764514_5768511_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5764514 - 5768511
Intron Length:
3998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTAACA
Flanking Amino Acid:
ECCKFTCLDPDGNSLFDSMA
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.7
0.62
1
73.6
40.4
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
60.4
0.32
2.2
80.03
36.1

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331