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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5769569_5770333_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5769569 - 5770333
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGG
5'SS Class:
major
3'SS Sequence:
TCATCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTCTTCATCT
Flanking Amino Acid:
NPDSILCSTPDGVLSQTVQS
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.3
46
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.3
0.77
0.8
76.6
37.2
Minor 5ss
44.9
-0.6
2.6
57.4
46.9
Minor BPS
59.9
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
DGCR2
Ensembl Gene ID:
ENSAPLG00000015913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016600
5707271 - 5770601
63331