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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5778870_5782108_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5778870 - 5782108
Intron Length:
3239

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCTTGGCCG
5'SS Class:
weak_major
3'SS Sequence:
AGGCCAGCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CTCTCTTGCAGG
Flanking Amino Acid:
LTQGGGSSSWVSPTVHVFPP
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.4
46.3
43.7
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
46.2
-0.2
1.1
34.6
34.8
Minor 5ss
22.8
-3.1
3.7
23.7
36.7
Minor BPS
42.3
-0.7
2.1
46.98
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025965
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030183
5778561 - 5788353
9793