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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5778881_5780713_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5778881 - 5780713
Intron Length:
1833

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCCCTGTAT
5'SS Class:
weak_major
3'SS Sequence:
CCCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GGGGTCTCACGG
Flanking Amino Acid:
SNFKLTQFLHGQPKVSPTVH
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.3
44.3
43.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
81.6
0.71
0.7
75.8
26.2
Minor 5ss
22.6
-3.2
4.1
35.2
43.3
Minor BPS
36.2
-1.1
1.9
31.99
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025965
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044200
5778561 - 5783754
5194