Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5780696_5783311_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5780696 - 5783311

Intron Length:

2616

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTAATTTTA

5'SS Class:

major

3'SS Sequence:

GTATCACTGTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TGGCCCTGTATC

Flanking Amino Acid:

EAVYYCGDYSSVFGAGTTLT

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

72.4

32.9

Major BPS

0.62

1.4

85.7

34.9

Major PPT

47.4

-0.1

1.7

55.4

44.6

Minor 5ss

45.7

-0.5

2.8

59.9

39.9

Minor BPS

47.9

-0.1

1.8

57.74

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039010

5778561 - 5788062

9502

ENSAPLT00000038300

5778561 - 5786009

7449

ENSAPLT00000020090

5778384 - 5788353

9970