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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5780725_5783292_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5780725 - 5783292
Intron Length:
2568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGACACAA
5'SS Class:
weak_major
3'SS Sequence:
CATGGCGTGGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GGACCCAGGACA
Flanking Amino Acid:
GDYSSNFKLTQFLHGQPKVS
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.2
48.9
37.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
43.9
-0.3
1.7
42.3
42.9
Minor 5ss
33.6
-1.9
3.2
44.3
44.2
Minor BPS
45.2
-0.3
1.7
52.88
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025965
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044200
5778561 - 5783754
5194