Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5782060_5783314_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5782060 - 5783314

Intron Length:

1255

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAGTAATT

5'SS Class:

weak_major

3'SS Sequence:

TGCATCTGCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTGCAT

U12 Branch Point Sequence:

TTGGGCTGCATC

Flanking Amino Acid:

DEAVYYCGDYTVHCCGCFLG

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.4

0.13

1.1

62.4

Major BPS

47.9

-0.1

1.6

59.3

47.1

Major PPT

66.5

0.37

Minor 5ss

40.3

-1.1

3.4

63.3

Minor BPS

41.7

-0.6

2.3

54.31

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046655

5778561 - 5788353

9793