Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5782120_5783323_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5782120 - 5783323

Intron Length:

1204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGACTACA

5'SS Class:

major

3'SS Sequence:

CCGTGACACGTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACAAAT

U12 Branch Point Sequence:

CACTCCGTGACA

Flanking Amino Acid:

QAEDEAVYYCASSWAWPHTG

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

69.4

36.6

Major BPS

57.1

0.18

62.9

30.6

Major PPT

0.09

0.9

47.4

34.7

Minor 5ss

36.3

-1.6

2.6

40.3

40.5

Minor BPS

52.3

0.06

2.1

62.83

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030098

5778561 - 5786694

8134

ENSAPLT00000020409

5778561 - 5788541

9981