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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5782164_5783292_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5782164 - 5783292
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGACACAA
5'SS Class:
weak_major
3'SS Sequence:
TCCCCTGGGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGATAT
U12 Branch Point Sequence:
AGCTGCTGGATA
Flanking Amino Acid:
GDYSSNFKLTQGGGSSSWVS
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.2
48.9
37.5
Major BPS
49.6
-0
1.3
46.7
46.7
Major PPT
45
-0.2
1.7
47.9
39.3
Minor 5ss
33.6
-1.9
3.2
44.3
44.2
Minor BPS
45.9
-0.3
1.9
53.66
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025965
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030183
5778561 - 5788353
9793