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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5783550_5788035_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5783550 - 5788035
Intron Length:
4486

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCGTGGCTA
5'SS Class:
major
3'SS Sequence:
GCCGGCCTCGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCAGCACTGACT
Flanking Amino Acid:
MDLQGLDLKSVNPGDTVQI
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.2
58.1
39.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
50.3
0.01
1.1
47.9
34.5
Minor 5ss
26.4
-2.7
4.2
37.6
41.7
Minor BPS
44.2
-0.3
2
58.76
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025965
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039010
5778561 - 5788062
9502