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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5791708_5792982_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5791708 - 5792982
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCAGAAGAG
5'SS Class:
weak_major
3'SS Sequence:
TGTTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTCTCTTCACCT
Flanking Amino Acid:
ALPDGQNGRNRIIRFPWQLV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.3
49
44.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81.6
0.71
0.9
77.7
36.7
Minor 5ss
17.9
-3.7
4.1
28.3
43.9
Minor BPS
52.7
0.16
1.9
71.32
46.1

Associated Gene:

Gene:
MMP11
Ensembl Gene ID:
ENSAPLG00000003064
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026233
5791355 - 5797538
6184