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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5793127_5794128_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5793127 - 5794128

Intron Length:

1002

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGCA

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAG

U12 Branch Point Sequence:

TTTGCCTGAGCT

Flanking Amino Acid:

GRADIVIDFTRYWHGDNLPF

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

34.7

Major BPS

44.9

-0.3

1.6

42.9

Major PPT

77.8

0.63

0.8

69.5

36.8

Minor 5ss

31.2

-2.2

3.2

38.8

46.5

Minor BPS

63.6

0.51

1.8

85.09

41.2

Associated Gene:

Gene:

MMP11

Ensembl Gene ID:

ENSAPLG00000003064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003109

5790230 - 5800446

10217

ENSAPLT00000026233

5791355 - 5797538

6184