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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5794263_5796817_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5794263 - 5796817

Intron Length:

2555

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTACGGCAC

5'SS Class:

major

3'SS Sequence:

CTCCCCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAGCAT

U12 Branch Point Sequence:

CTAGGCAAAAGC

Flanking Amino Acid:

DETWTIGNNLGTDLLQVAAH

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.1

44.1

Major BPS

48.7

-0

1.4

57.8

Major PPT

81.7

0.71

0.7

75.9

26.1

Minor 5ss

29.5

-2.3

3.4

32.7

42.4

Minor BPS

35.2

-1.1

2.3

43.14

44.3

Associated Gene:

Gene:

MMP11

Ensembl Gene ID:

ENSAPLG00000003064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003109

5790230 - 5800446

10217

ENSAPLT00000026233

5791355 - 5797538

6184