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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5797066_5797214_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5797066 - 5797214

Intron Length:

149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CGTGCTTTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

AGCCGCTGACCA

Flanking Amino Acid:

LETNEITNVESVQPDACDTA

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.99

0.7

82.8

23.2

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

69.2

0.43

1.1

64.8

41.3

Minor 5ss

26.6

-2.7

30.8

43.1

Minor BPS

41.8

-0.6

48.85

41.4

Associated Gene:

Gene:

MMP11

Ensembl Gene ID:

ENSAPLG00000003064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026233

5791355 - 5797538

6184

ENSAPLT00000003109

5790230 - 5800446

10217