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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5797429_5799168_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5797429 - 5799168
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GCCTCCTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCCTCCTCACCA
Flanking Amino Acid:
DPLGNIWFFQDSQYWIYDGE
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
66.8
0.38
0.9
58.7
37.1
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
50.1
0
1.9
60.01
45.8

Associated Gene:

Gene:
MMP11
Ensembl Gene ID:
ENSAPLG00000003064
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003109
5790230 - 5800446
10217