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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5807008_5807672_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5807008 - 5807672
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
TTTCTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTGAC
U12 Branch Point Sequence:
TTTCTCCCAACA
Flanking Amino Acid:
ERKKIVASSHENQRSHSPRR
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
54.8
0.12
1.1
46.8
37.9
Major PPT
78.7
0.65
0.8
74.5
29.3
Minor 5ss
27.5
-2.6
2.7
28.4
38
Minor BPS
54.9
0.15
1.9
73.95
37.2

Associated Gene:

Gene:
SMARCB1
Ensembl Gene ID:
ENSAPLG00000003296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044128
5806345 - 5816379
10035
ENSAPLT00000003385
5806345 - 5817197
10853