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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5807703_5809190_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5807703 - 5809190
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCCATGTTAATT
Flanking Amino Acid:
ENQRSHSPRRYHGYTTLATS
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
69.3
0.43
1
65.5
39.9
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
49.6
0.05
2.1
67.3
44.4

Associated Gene:

Gene:
SMARCB1
Ensembl Gene ID:
ENSAPLG00000003296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044128
5806345 - 5816379
10035
ENSAPLT00000003385
5806345 - 5817197
10853