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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5810035_5810658_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5810035 - 5810658
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
CTCTTTTTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACATAT
U12 Branch Point Sequence:
CTCTTTTTATTA
Flanking Amino Acid:
GRDKKRTFPLCFDDHDPAVI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71
35.7
Major BPS
54.1
0.1
1
50.6
35
Major PPT
79.9
0.67
0.8
81.3
29.1
Minor 5ss
43.1
-0.8
3
55.7
43.3
Minor BPS
54
0.12
1.6
61.49
40.2

Associated Gene:

Gene:
SMARCB1
Ensembl Gene ID:
ENSAPLG00000003296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044128
5806345 - 5816379
10035
ENSAPLT00000003385
5806345 - 5817197
10853