About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5816244_5817157_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5816244 - 5817157
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGCCG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAC
U12 Branch Point Sequence:
ATTAACACAACA
Flanking Amino Acid:
KKIRDQDRNTRRMRRLANTA
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.1
47
42.9
Major BPS
61.1
0.28
1.1
69.4
35.9
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
24.6
-2.9
3.2
30.9
42.6
Minor BPS
47.5
-0.1
2
65.7
39.6

Associated Gene:

Gene:
SMARCB1
Ensembl Gene ID:
ENSAPLG00000003296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003385
5806345 - 5817197
10853