About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5820739_5821325_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5820739 - 5821325
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CATCCCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ATGGGCACATCC
Flanking Amino Acid:
GKKLLLTPSFLKMVFDTPEE
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
68.8
0.42
1
61.4
39.7
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
36.2
-1
2.2
45.65
42.9

Associated Gene:

Gene:
DERL3
Ensembl Gene ID:
ENSAPLG00000003810
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003896
5820627 - 5824033
3407